{
    "name": "Augustus",
    "description": "Predict genes in eukaryotic genomic sequences",
    "url": "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.2.tar.gz",
    "mirror": null,
    "homepage": "http://bioinf.uni-greifswald.de/augustus/",
    "depends": [
        {
            "depend": "bamtools",
            "build-depend": false
        },
        {
            "depend": "boost",
            "build-depend": false
        }
    ],
    "resource": [],
    "conflicts": [],
    "patches": [],
    "install": [
        "inreplace \"auxprogs/Makefile\", \"cd bam2wig; make;\", \"#cd bam2wig; make;\"",
        "inreplace \"auxprogs/bam2hints/Makefile\",",
        "\"INCLUDES = /usr/include/bamtools\",",
        "\"INCLUDES = #{Formula[\"bamtools\"].include/\"bamtools\"}\"",
        "inreplace \"auxprogs/filterBam/src/Makefile\",",
        "\"BAMTOOLS = /usr/include/bamtools\",",
        "\"BAMTOOLS= #{Formula[\"bamtools\"].include/\"bamtools\"}\"",
        "inreplace \"Makefile\", %r{ln -sf.*/usr/local/bin/}, \"#ln -sf\"",
        "system \"make\", \"clean\"",
        "system \"make\"",
        "system \"make\", \"install\", \"INSTALLDIR=#{prefix}\"",
        "bin.env_script_all_files libexec/\"bin\", :AUGUSTUS_CONFIG_PATH => prefix/\"config\""
    ],
    "version": "3.3.2",
    "file": "augustus.rb"
}