use _apt:root only for partial directories

Using a different user for calling methods is intended to protect us
from methods running amok (via remotely exploited bugs) by limiting what
can be done by them. By using root:root for the final directories and
just have the files in partial writeable by the methods we enhance this
in sofar as a method can't modify already verified data in its parent
directory anymore.

As a side effect, this also clears most of the problems you could have
if the final directories are shared without user-sharing or if these
directories disappear as they are now again root owned and only the
partial directories contain _apt owned files (usually none if apt isn't
running) and the directory itself is autocreated with the right
permissions.

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