diff options
Diffstat (limited to 'homebrew/bcftools')
-rw-r--r-- | homebrew/bcftools/.beer | 33 | ||||
-rw-r--r-- | homebrew/bcftools/.make.sh-auto | 4 | ||||
-rw-r--r-- | homebrew/bcftools/_metadata/description | 1 | ||||
-rw-r--r-- | homebrew/bcftools/_metadata/homepage | 1 | ||||
-rw-r--r-- | homebrew/bcftools/_metadata/name | 1 | ||||
-rw-r--r-- | homebrew/bcftools/_metadata/version | 1 | ||||
-rwxr-xr-x | homebrew/bcftools/download.sh | 1 |
7 files changed, 42 insertions, 0 deletions
diff --git a/homebrew/bcftools/.beer b/homebrew/bcftools/.beer new file mode 100644 index 000000000..bcd7601a7 --- /dev/null +++ b/homebrew/bcftools/.beer @@ -0,0 +1,33 @@ +{ + "name": "Bcftools", + "description": "Tools for BCF/VCF files and variant calling from samtools", + "url": "https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2", + "mirror": null, + "homepage": "https://www.htslib.org/", + "depends": [ + { + "depend": "gsl", + "build-depend": false + }, + { + "depend": "htslib", + "build-depend": false + }, + { + "depend": "xz", + "build-depend": false + } + ], + "resource": [], + "conflicts": [], + "patches": [], + "install": [ + "system \"./configure\", \"--prefix=#{prefix}\",", + "\"--with-htslib=#{Formula[\"htslib\"].opt_prefix}\",", + "\"--enable-libgsl\"", + "system \"make\", \"install\"", + "pkgshare.install \"test/query.vcf\"" + ], + "version": "1.9", + "file": "bcftools.rb" +}
\ No newline at end of file diff --git a/homebrew/bcftools/.make.sh-auto b/homebrew/bcftools/.make.sh-auto new file mode 100644 index 000000000..56b589ef8 --- /dev/null +++ b/homebrew/bcftools/.make.sh-auto @@ -0,0 +1,4 @@ +pkg:setup +pkg:configure --with-htslib=#{Formula[htslib"].opt_prefix}" --enable-libgsl +make DESTDIR=${PKG_DEST} install +pkgshare.install "test/query.vcf" diff --git a/homebrew/bcftools/_metadata/description b/homebrew/bcftools/_metadata/description new file mode 100644 index 000000000..a30507013 --- /dev/null +++ b/homebrew/bcftools/_metadata/description @@ -0,0 +1 @@ +Tools for BCF/VCF files and variant calling from samtools diff --git a/homebrew/bcftools/_metadata/homepage b/homebrew/bcftools/_metadata/homepage new file mode 100644 index 000000000..eb03bde71 --- /dev/null +++ b/homebrew/bcftools/_metadata/homepage @@ -0,0 +1 @@ +https://www.htslib.org/ diff --git a/homebrew/bcftools/_metadata/name b/homebrew/bcftools/_metadata/name new file mode 100644 index 000000000..fe6b0a4ea --- /dev/null +++ b/homebrew/bcftools/_metadata/name @@ -0,0 +1 @@ +Bcftools diff --git a/homebrew/bcftools/_metadata/version b/homebrew/bcftools/_metadata/version new file mode 100644 index 000000000..2e0e38c63 --- /dev/null +++ b/homebrew/bcftools/_metadata/version @@ -0,0 +1 @@ +1.9 diff --git a/homebrew/bcftools/download.sh b/homebrew/bcftools/download.sh new file mode 100755 index 000000000..572bc092f --- /dev/null +++ b/homebrew/bcftools/download.sh @@ -0,0 +1 @@ +wget https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2
\ No newline at end of file |