diff options
Diffstat (limited to 'homebrew/sratoolkit')
-rw-r--r-- | homebrew/sratoolkit/.beer | 41 | ||||
-rw-r--r-- | homebrew/sratoolkit/.make.sh-auto | 7 | ||||
-rw-r--r-- | homebrew/sratoolkit/_metadata/description | 1 | ||||
-rw-r--r-- | homebrew/sratoolkit/_metadata/homepage | 1 | ||||
-rw-r--r-- | homebrew/sratoolkit/_metadata/name | 1 | ||||
-rw-r--r-- | homebrew/sratoolkit/_metadata/version | 1 | ||||
-rwxr-xr-x | homebrew/sratoolkit/download.sh | 1 |
7 files changed, 53 insertions, 0 deletions
diff --git a/homebrew/sratoolkit/.beer b/homebrew/sratoolkit/.beer new file mode 100644 index 000000000..b63be6b5b --- /dev/null +++ b/homebrew/sratoolkit/.beer @@ -0,0 +1,41 @@ +{ + "name": "Sratoolkit", + "description": "Data tools for INSDC Sequence Read Archive", + "url": "https://github.com/ncbi/sra-tools/archive/2.9.3.tar.gz", + "mirror": null, + "homepage": "https://github.com/ncbi/sra-tools", + "depends": [ + { + "depend": "hdf5", + "build-depend": false + }, + { + "depend": "libmagic", + "build-depend": false + } + ], + "resource": [ + { + "name": "ngs-sdk", + "url": "https://github.com/ncbi/ngs/archive/2.9.2.tar.gz" + }, + { + "name": "ncbi-vdb", + "url": "https://github.com/ncbi/ncbi-vdb/archive/2.9.2.tar.gz" + } + ], + "conflicts": [], + "patches": [], + "install": [ + "ngs_sdk_prefix = buildpath/\"ngs-sdk-prefix\"", + "resource(\"ngs-sdk\").stage do", + "cd \"ngs-sdk\" do", + "system \"./configure\",", + "\"--prefix=#{ngs_sdk_prefix}\",", + "\"--build=#{buildpath}/ngs-sdk-build\"", + "system \"make\"", + "system \"make\", \"install\"" + ], + "version": "2.9.3", + "file": "sratoolkit.rb" +}
\ No newline at end of file diff --git a/homebrew/sratoolkit/.make.sh-auto b/homebrew/sratoolkit/.make.sh-auto new file mode 100644 index 000000000..85d5f6d92 --- /dev/null +++ b/homebrew/sratoolkit/.make.sh-auto @@ -0,0 +1,7 @@ +pkg:setup +ngs_sdk_prefix = buildpath/"ngs-sdk-prefix" +resource("ngs-sdk").stage do +cd "ngs-sdk" +pkg:configure --build=#{buildpath}/ngs-sdk-build +make +make DESTDIR=${PKG_DEST} install diff --git a/homebrew/sratoolkit/_metadata/description b/homebrew/sratoolkit/_metadata/description new file mode 100644 index 000000000..eddbced45 --- /dev/null +++ b/homebrew/sratoolkit/_metadata/description @@ -0,0 +1 @@ +Data tools for INSDC Sequence Read Archive diff --git a/homebrew/sratoolkit/_metadata/homepage b/homebrew/sratoolkit/_metadata/homepage new file mode 100644 index 000000000..078b728b2 --- /dev/null +++ b/homebrew/sratoolkit/_metadata/homepage @@ -0,0 +1 @@ +https://github.com/ncbi/sra-tools diff --git a/homebrew/sratoolkit/_metadata/name b/homebrew/sratoolkit/_metadata/name new file mode 100644 index 000000000..891c9b194 --- /dev/null +++ b/homebrew/sratoolkit/_metadata/name @@ -0,0 +1 @@ +Sratoolkit diff --git a/homebrew/sratoolkit/_metadata/version b/homebrew/sratoolkit/_metadata/version new file mode 100644 index 000000000..4db4b0359 --- /dev/null +++ b/homebrew/sratoolkit/_metadata/version @@ -0,0 +1 @@ +2.9.3 diff --git a/homebrew/sratoolkit/download.sh b/homebrew/sratoolkit/download.sh new file mode 100755 index 000000000..2f7a97d7b --- /dev/null +++ b/homebrew/sratoolkit/download.sh @@ -0,0 +1 @@ +wget https://github.com/ncbi/sra-tools/archive/2.9.3.tar.gz
\ No newline at end of file |