Ported in the homebrew-marauder for a hacky update/import system.

	TODO: Maybe add a license & fix up messy code.

7 files changed, 53 insertions, 0 deletions

diff --git a/homebrew/mmseqs2/.beer b/homebrew/mmseqs2/.beer
new file mode 100644
index 000000000..64251dec1
--- /dev/null
+++ b/homebrew/mmseqs2/.beer
@@ -0,0 +1,38 @@
+{
+    "name": "Mmseqs2",
+    "description": "Software suite for very fast protein sequence search and clustering",
+    "url": "https://github.com/soedinglab/MMseqs2/archive/8-fac81.tar.gz",
+    "mirror": null,
+    "homepage": "https://mmseqs.org/",
+    "depends": [
+        {
+            "depend": "cmake",
+            "build-depend": true
+        },
+        {
+            "depend": "gcc",
+            "build-depend": false
+        }
+    ],
+    "resource": [
+        {
+            "name": "documentation",
+            "url": "https://github.com/soedinglab/MMseqs2.wiki.git"
+        }
+    ],
+    "conflicts": [],
+    "patches": [],
+    "install": [
+        "args = *std_cmake_args << \"-DHAVE_TESTS=0\" << \"-DHAVE_MPI=0\"",
+        "args << \"-DVERSION_OVERRIDE=#{version}\"",
+        "args << \"-DHAVE_SSE4_1=1\"",
+        "args << \"-DCMAKE_CXX_FLAGS=-D__APPLE_API_STRICT_CONFORMANCE\"",
+        "system \"cmake\", \".\", *args",
+        "system \"make\", \"install\"",
+        "resource(\"documentation\").stage { doc.install Dir[\"*\"] }",
+        "pkgshare.install \"examples\"",
+        "bash_completion.install \"util/bash-completion.sh\" => \"mmseqs.sh\""
+    ],
+    "version": "8-",
+    "file": "mmseqs2.rb"
+}
\ No newline at end of file
diff --git a/homebrew/mmseqs2/.make.sh-auto b/homebrew/mmseqs2/.make.sh-auto
new file mode 100644
index 000000000..a2473276e
--- /dev/null
+++ b/homebrew/mmseqs2/.make.sh-auto
@@ -0,0 +1,10 @@
+pkg:setup
+args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
+args << "-DVERSION_OVERRIDE=#{version}"
+args << "-DHAVE_SSE4_1=1"
+args << "-DCMAKE_CXX_FLAGS=-D__APPLE_API_STRICT_CONFORMANCE"
+cmake . *args
+make DESTDIR=${PKG_DEST} install
+resource("documentation").stage { doc.install Dir["*"] }
+pkgshare.install "examples"
+bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
diff --git a/homebrew/mmseqs2/_metadata/description b/homebrew/mmseqs2/_metadata/description
new file mode 100644
index 000000000..0effdef0b
--- /dev/null
+++ b/homebrew/mmseqs2/_metadata/description
@@ -0,0 +1 @@
+Software suite for very fast protein sequence search and clustering
diff --git a/homebrew/mmseqs2/_metadata/homepage b/homebrew/mmseqs2/_metadata/homepage
new file mode 100644
index 000000000..bb6e687f3
--- /dev/null
+++ b/homebrew/mmseqs2/_metadata/homepage
@@ -0,0 +1 @@
+https://mmseqs.org/
diff --git a/homebrew/mmseqs2/_metadata/name b/homebrew/mmseqs2/_metadata/name
new file mode 100644
index 000000000..b33e1b58a
--- /dev/null
+++ b/homebrew/mmseqs2/_metadata/name
@@ -0,0 +1 @@
+Mmseqs2
diff --git a/homebrew/mmseqs2/_metadata/version b/homebrew/mmseqs2/_metadata/version
new file mode 100644
index 000000000..b4e90ab8b
--- /dev/null
+++ b/homebrew/mmseqs2/_metadata/version
@@ -0,0 +1 @@
+8-
diff --git a/homebrew/mmseqs2/download.sh b/homebrew/mmseqs2/download.sh
new file mode 100755
index 000000000..a526b2e36
--- /dev/null
+++ b/homebrew/mmseqs2/download.sh
@@ -0,0 +1 @@
+wget https://github.com/soedinglab/MMseqs2/archive/8-fac81.tar.gz
\ No newline at end of file