diff options
| author | MCApollo <34170230+MCApollo@users.noreply.github.com> | 2019-04-20 20:49:46 -0500 |
|---|---|---|
| committer | MCApollo <34170230+MCApollo@users.noreply.github.com> | 2019-04-23 20:18:47 -0500 |
| commit | 12335518ab39608d58370c85ff9f5384ad2aa5f7 (patch) | |
| tree | 352d81f2a2de3f1252af732080ec0fde38c13b4d /homebrew/samtools | |
| parent | a2b26ad12d4fa12f0273645caf4be6d0b8b71e7c (diff) | |
Ported in the homebrew-marauder for a hacky update/import system.
TODO: Maybe add a license & fix up messy code.
Diffstat (limited to 'homebrew/samtools')
| -rw-r--r-- | homebrew/samtools/.beer | 23 | ||||
| -rw-r--r-- | homebrew/samtools/.make.sh-auto | 3 | ||||
| -rw-r--r-- | homebrew/samtools/_metadata/description | 1 | ||||
| -rw-r--r-- | homebrew/samtools/_metadata/homepage | 1 | ||||
| -rw-r--r-- | homebrew/samtools/_metadata/name | 1 | ||||
| -rw-r--r-- | homebrew/samtools/_metadata/version | 1 | ||||
| -rwxr-xr-x | homebrew/samtools/download.sh | 1 |
7 files changed, 31 insertions, 0 deletions
diff --git a/homebrew/samtools/.beer b/homebrew/samtools/.beer new file mode 100644 index 000000000..dd439566f --- /dev/null +++ b/homebrew/samtools/.beer @@ -0,0 +1,23 @@ +{ + "name": "Samtools", + "description": "Tools for manipulating next-generation sequencing data", + "url": "https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2", + "mirror": null, + "homepage": "https://www.htslib.org/", + "depends": [ + { + "depend": "htslib", + "build-depend": false + } + ], + "resource": [], + "conflicts": [], + "patches": [], + "install": [ + "system \"./configure\", \"--prefix=#{prefix}\",", + "\"--with-htslib=#{Formula[\"htslib\"].opt_prefix}\"", + "system \"make\", \"install\"" + ], + "version": "1.9", + "file": "samtools.rb" +}
\ No newline at end of file diff --git a/homebrew/samtools/.make.sh-auto b/homebrew/samtools/.make.sh-auto new file mode 100644 index 000000000..325275930 --- /dev/null +++ b/homebrew/samtools/.make.sh-auto @@ -0,0 +1,3 @@ +pkg:setup +pkg:configure --with-htslib=#{Formula[htslib"].opt_prefix}" +make DESTDIR=${PKG_DEST} install diff --git a/homebrew/samtools/_metadata/description b/homebrew/samtools/_metadata/description new file mode 100644 index 000000000..aa2305c21 --- /dev/null +++ b/homebrew/samtools/_metadata/description @@ -0,0 +1 @@ +Tools for manipulating next-generation sequencing data diff --git a/homebrew/samtools/_metadata/homepage b/homebrew/samtools/_metadata/homepage new file mode 100644 index 000000000..eb03bde71 --- /dev/null +++ b/homebrew/samtools/_metadata/homepage @@ -0,0 +1 @@ +https://www.htslib.org/ diff --git a/homebrew/samtools/_metadata/name b/homebrew/samtools/_metadata/name new file mode 100644 index 000000000..e59e303c2 --- /dev/null +++ b/homebrew/samtools/_metadata/name @@ -0,0 +1 @@ +Samtools diff --git a/homebrew/samtools/_metadata/version b/homebrew/samtools/_metadata/version new file mode 100644 index 000000000..2e0e38c63 --- /dev/null +++ b/homebrew/samtools/_metadata/version @@ -0,0 +1 @@ +1.9 diff --git a/homebrew/samtools/download.sh b/homebrew/samtools/download.sh new file mode 100755 index 000000000..941d286a3 --- /dev/null +++ b/homebrew/samtools/download.sh @@ -0,0 +1 @@ +wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2
\ No newline at end of file |